Publications

Quantifying mobility responses to COVID-19 containment strategies in Spain

Cuevas Blanco, Mar (Advisor: Sandro Meloni)
Master Thesis (2022)

Marine protected areas regulate the structure of fish communities threatened by global warming and human impact

Tabi, Andrea; Gilarranz, Luis J. ; Saavedra, Serguei
Submitted (2022)

Global collision-risk hotspots of marine traffic and the world’s largest fish, the whale shark

Womersley, Freya C.; Humphries, Nicolas E. ; ...; Eguiluz, Víctor M., ...
Proceedings of the National Academy of Sciences 112, 1-10 (2022)

Rapid evolution of SARS-CoV-2 challenges human defenses

Duarte, Carlos M; Ketcheson, David I; Eguíluz, Víctor M; Agustí, Susana; Fernández-Gracia, Juan; Jamil, Tahira; Laiolo, Elisa; Gojobori, Takashi; Alam, Intikhab
Scientific Reports 12, 1-8 (2022)

Optical dendrites for spatio-temporal computing with few-mode fibers

Ortín, Silvia; Soriano, Miguel C.; Fischer, Ingo; Mirasso, Claudio R.; Argyris, Apostolos
Optical Materials Express 12 (5), 1907-1919 (2022)

Seagrass spatiotemporal dynamics with a time-dependent mortality

Mampel, Jorge (Advisors: Gomila, Damià; Ruiz-Reynés, Daniel)
Master Thesis (2022)

Eigenvalues of random matrices with generalised correlations: a path integral approach

Baron, Joseph William; Jewell, Thomas Jun; Ryder, Christopher; Galla, Tobias
Physical Review Letters 128, 120601 (1-6) (2022)

Network meta‐analysis and random walks

Davies, Annabel L.; Papakonstantinou, Theodorus; Nikolakopoulou, Adriani; Rücker, Gerta; Galla, Tobias
Statistics in Medicine 41, 2091-2114 (2022)

Noise effects on time delay reservoir computing using silicon microring resonators

Donati, Giovanni; (Argyris, Apostolos; Mancinelli, Mattia; Mirasso, Claudio Ruben; Pavesi, Lorenzo; )
Integrated Optics: Devices, Materials, and Technologies XXVI, SPIE, 12004, 219--226 (2022)

Telling functional networks apart using ranked network features stability

Zanin, Massimiliano; Güntekin, Bahar; Aktürk, Tuba; Yıldırım, Ebru; Yener, Görsev; Kiyi, Ilayda; Hünerli-Gündüz, Duygu; Sequeira, Henrique; Papo, David
Scientific Reports 12, 2562 (2022)

A mathematical model for inter-specific seagrass interactions: reproducing field observations for C. nodosa and C. prolifera

Eva Llabrés, Elvira Mayol, Núria Marbá, Tomás Sintes
OIKOS 2022, e09296 (1-10) (2022)

The shape of memory in temporal networks

Williams, Oliver; Lacasa, Lucas; Millán, Ana; Latora, Vito
Nature Communications 13, (2022)

A Fast Transform for Brain Connectivity Difference Evaluation

Zanin, Massimiliano; Ivanoska, Ilinka; Güntekin, Bahar; Yener, Görsev; Loncar-Turukalo, Tatjana; Jakovljevic, Niksa; Sveljo, Olivera; Papo, David
Neuroinformatics 20, 285-299 (2022)

From networked SIS model to the Gompertz function

Ernesto Estrada, Paolo Bartesaghi
Applied Mathematics and Computation 419, 126882 (2022)

Time and space generalized diffusion equation on graph/networks

Estrada, Ernesto; Diaz-Diaz, Fernando
Chaos, Solitons and Fractals 156, 111791 (1-9) (2022)

Modeling the cortical-hippocampal connectivity to resemble in vitro Multi-Electrode recordings.

Bernasconi, Eleonora (Advisors: Claudio Mirasso and Paolo Massobrio)
Master Thesis presented at the University of Genova (2021)

Quantifying the drivers behind collective attention in information ecosystems

Calleja-Solanas, Violeta; Pigani,Emanuele; Palazzi, María J; Solé-Ribalta, Albert; Suweis, Samir; Borge-Holthoefer, Javier; Meloni, Sandro
Journal of Physics: Complexity 2, 45014-45029 (2021)

Traveling pulses in type-I excitable media

Arinyo-i-Prats, Andreu; Moreno-Spiegelberg, Pablo; Matias, Manuel A.; Gomila, Damià
Physical Review E 104, L052203 (2021)

Study on the role of inhibition on granule cells of the dentate gyrus in the propagation of activity and computation in the hippocampus

Cristian Estarellas Martín (Supervisors: Claudio Mirasso and Santiago Canals)
PhD Thesis (2021)

Algorithmic Approaches for Assessing Irreversibility in Time Series: Review and Comparison

Zanin, Massimiliano; Papo, David
Entropy 23, 1474 (2021)

Evolutionary Game Theory with payoff fluctuations: Bet-Hedging

Calvo Ibáñez, Ruben (supervisor Tobias Galla)
Master Thesis (2021)

Classifying diseases by using biological features to identify potential nosological models

Prieto Santamaría, Lucía; Eduardo P. García del Valle; Massimiliano Zanin; Gandhi Samuel Hernández Chan; Yuliana Pérez Gallardo; Alejandro Rodríguez-González
Scientific Reports 11, 21096 (2021)

Unveiling the role of plasticity rules in reservoir computing

Morales, Guillermo B.; Mirasso, Claudio R.; Soriano, Miguel C.
Neurocomputing 461, 705-715 (2021)

A normal form for excitable vegetation dynamics

Martorell, Carles (Advisors: Gomila, Damià; Moreno-Spiegelberg, Pablo)
Master Thesis (2021)

Household networks and bubbling: insights from percolation theory

Ellen Brooks-Pollock; Lucas Lacasa; Leon Danon
Philosophical Transactions of the Royal Society B 376: 20200284 (2021) 376, (2021)

Estimates of regional infectivity of COVID-19 in the United Kingdom following imposition of social distancing measures

Robert Challen; Krasimira Tsaneva; Martin Pitt; Tom Edwards; Luke Gompels; Lucas Lacasa; Ellen Brooks-Pollock; Chris Martin; Gareth Griffith; Leon Danon
Phil. Trans. Roy. Soc. B 376: 20200280 (2021) 376, (2021)

A compartmental model for vector transmitted diseases: an application to Xylella fastidiosa

Rosa Flaquer Galmés (Advisor: Matias, Manuel A.)
Master Thesis (2021)

Comprehensive analytical approaches reveal species-specific search strategies in sympatric apex predatory sharks

Hannah J Calich; Jorge P Rodríguez; Víctor M Eguíluz, Neil Hammerschlag; Charitha Pattiaratchi; Carlos M Duarte; Ana MM Sequeira
Ecography 44, 1-13 (2021)

Modelling Parasite-produced Marine Diseases: The case of the Mass Mortality Event of Pinna nobilis

Giménez-Romero, Àlex; Grau, Amalia; Hendriks, Iris E.; Matias, Manuel A.
Ecological Modelling 459, 109705 (1-15) (2021)

The AIMe registry for artificial intelligence in biomedical research

Julian Matschinske, ..., Massimiliano Zanin, Olga Zolotareva, Jan Baumbach & David B. Blumenthal
Nature Methods , (2021)

Reservoir Computing: Theory, Physical Implementations, and Applications

Nakajima, Kohei; Fischer, Ingo (Editors)
, Springer Singapore (2021)

Information Transmission in Delay-Coupled Neuronal Circuits in the Presence of a Relay Population

Sánchez-Claros, Jaime ; Pariz, Aref; Valizadeh, Alireza; Canals, Santiago; Mirasso, Claudio
Frontiers in Systems Neuroscience 15, 705371: 1-16 (2021)

Beyond the adiabatic limit in systems with fast environments: A tau-leaping algorithm

Berrios-Caro, Ernesto; Galla, Tobias
Physical Review E 104, 014122 (2021)

Leveraging network analysis to evaluate biomedical named entity recognition tools

Eduardo P. García del Valle; Gerardo Lagunes García; Lucía Prieto Santamaría; Massimiliano Zanin; Ernestina Menasalvas Ruiz; Alejandro Rodríguez-González
Scientific Reports 11, 13537 (2021)

Beyond pairwise network similarity: exploring mediation and suppression between networks

Lucas Lacasa, Sebastiano Stramaglia, Daniele Marinazzo
Communications Physics 4, (2021)

DisMaNET: A network-based tool to cross map disease vocabularies

Eduardo P.García del Valle; Gerardo Lagunes García; Lucía Prieto Santamaría; Massimiliano Zanin; Ernestina Menasalvas Ruiz; Alejandro Rodríguez-González
Computer Methods and Programs in Biomedicine 207, 106233 (2021)

Statistical and Machine Learning Link Selection Methods for Brain Functional Networks: Review and Comparison

Ilinka Ivanoska; Kire Trivodaliev; Slobodan Kalajdziski; Massimiliano Zanin
Brain Sciences 11 (6), 735 (2021)

Global COVID-19 lockdown highlights humans as both threats and custodians of the environment

Amanda E. Bates et al
Biological Conservation 263, 109175 (2021)

Principles and open questions in functional brain network reconstruction

Korhonen, Onerva; Zanin, Massimiliano; Papo, David
Human Brain Mapping 42, 3680-3711 (2021)

Cascading from SARS-CoV-2 to Parkinson’s Disease through Protein-Protein Interactions

Estrada, Ernesto
Viruses 13, 897 (2021)

Transmission delays and frequency detuning can regulate information flow between brain regions

Pariz, A., Fischer, I., Valizadeh, A. Mirasso, C.
Plos Computational Biology 17, e1008129 (2021)

Host‐association as major driver of microbiome structure and composition in Red Sea seagrass ecosystems

N Garcias‐Bonet; VM Eguíluz; R Díaz‐Rúa; CM Duarte
Environmental Microbiology 23, 2021-2034 (2021)

An ecological approach to structural flexibility in online communication systems

Palazzi,María J.; Solé-Ribalta,Albert; Calleja-Solanas,Violeta; Meloni,Sandro; Plata,Carlos A.; Suweis,Samir; Borge-Holthoefer,Javier;
Nature Communications , (2021)

A standardisation framework for bio‐logging data to advance ecological research and conservation

Ana MM Sequeira, Malcolm O'Toole, Theresa R Keates, Laura H McDonnell, Camrin D Braun, Xavier Hoenner, Fabrice RA Jaine, Ian D Jonsen, Peggy Newman, Jonathan Pye, Steven J Bograd, Graeme C Hays, Elliott L Hazen, Melinda Holland, Vardis M Tsontos, Clint Blight, Francesca Cagnacci, Sarah C Davidson, H
Methods in Ecology and Evolution 12, 996-1007 (2021)

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