Publications

How spatiotemporal dynamics can enhance ecosystem resilience

Moreno-Spiegelberg, Pablo; Rietkerk, Max; Gomila, Damià
Proceedings of the National Academy of Sciences of the USA (PNAS) 122, e2412522122 (2025)

Excitable dynamics and coral reef formation: A simple model of macro-scale structure development

Álvarez-Alegría, Miguel; Moreno-Spiegelberg, Pablo; Matias, Manuel A; Gomila, Damià
Physical Review Research (accepted), (2025)

Thermodynamic inference in molecular motors: a Martingale approach

Nadal-Rosa,Adrián and Manzano, Gonzalo
Submitted (2025)

Leaf susceptibility of Macaronesian laurel forest species to Phytophthora ramorum

Moralejo, Eduardo; García-Muñoz, José A.; Denman, Sandra; Giménez-Romero, Àlex
European Journal of Forest Research , (2025)

Metacommunity dynamics of complex life-cycles in exploited seascapes

Vasconcelos, Joana;Riera, Rodrigo;Vahdati Ali V.;Geppi, Eros F.;Sousa, Ricardo;Eguíluz, Victor M.;Pinto, Ana Rita;Melián, Carlos J.
Submitted (2025)

Navigating uncertainty: Risk-averse versus risk-prone strategies in populations facing demographic and environmental stochasticity

Calvo, Rubén; Muñoz, Miguel Ángel; Galla, Tobias
Physical Review E 111, 024118 (2025)

Proliferating active disks with game dynamical interaction

Almodovar, Alejandro; Galla, Tobias; López, Cristóbal
Submitted (2025)

Comparing temporal and aggregated network descriptions of fluid transport in the Mediterranean Sea

Acharya, Kishor; Aguilar, Javier; Dall’Amico, Lorenzo; Nicolaou, Kyriacos; Meloni, Sandro; Ser-Giacomi, Enrico;
Physical Review E 111 , 024211 (2025)

Mapping and modeling age-related changes in intrinsic neural timescales

Wu, Kaichao; Gollo, Leonardo L.
Communications Biology , (2025)

On the stability of competitive ecological communities with pairwise and higher-order interactions

Duran-Sala, Marc; Meloni, Sandro; Calleja-Solanas, Violeta;
Submitted (2025)

A comprehensive dataset on global coral reefs size and geometry

Giménez-Romero, Alex; Matias, Manuel A.; Duarte, Carlos M.
Submitted (2025)

Deep Learning Unravels Differences Between Kinematic and Kinetic Gait Cycle Time Series from Two Control Samples of Healthy Children Assessed in Two Different Gait Laboratories

De Gorostegui Álvarez de Miranda, Alfonso; Kiernan, Damien; Martín-Gonzalo, Juan-Andrés; López-López, Javier; Pulido-Valdeolivas, Irene; Rausell, Estrella; Zanin, Massimiliano; Gómez-Andrés, David
Sensors 25, 110 (2025)

High-resolution climate data reveals increased risk of Pierce's Disease for grapevines worldwide

Giménez-Romero, Àlex; Moralejo, Eduardo; Matías, Manuel A.
Submitted (2025)

Mapping the distribution of seagrass meadows from space with deep convolutional neural networks

Giménez-Romero, Àlex; Ferchichi, Dhafer; Moreno-Spiegelberg, Pablo; Sintes, Tomàs; Matías, Manuel A.
Submitted (2025)

Shear and transport in a flow environment determine spatial patterns and population dynamics in a model of nonlocal ecological competition

Silvano, Nathan O. ; Valeriano, João; Hernández-García, Emilio; López, Cristóbal; Martinez-Garcia, Ricardo
Submitted (2025)

Unravelling the universal spatial properties of coral reefs

Giménez-Romero, Àlex; Matías, Manuel A.; Duarte, Carlos M.
Global Ecology and Biogeography 34, e13939 (1-12) (2025)

Analyzing bacterial networks and interactions in skin and gills of Sparus aurata with microalgae-based additive feeding

Cerezo, Isabel María; Herrada, Ernesto Alejandro; Fernández-Gracia, Juan; Sáez-Casado, M. I.; Martos-Sitcha, J. A.; Moriñigo, M. A.; Tapia-Paniagua, S. T.
Scientific Reports 14, 31696 (2024)

Manipulating Time Series Irreversibility Through Continuous Ordinal Patterns

Zanin, Massimiliano
Symmetry 16, 1696 (2024)

Non-local transitions and ground state switching in the self-organization of vascular networks

Klemm, Konstantin; Martens, Erik A.
Chaos 34, 123157 (1-10) (2024)

Six decades of the FitzHugh–Nagumo model: A guide through its spatio-temporal dynamics and influence across disciplines

Cebrián-Lacasa, Daniel; Parra-Rivas, Pedro; Ruiz-Reynés, Daniel; Gelens, Lendert;
Physics Reports 1096, 1-39 (2024)

Cómo los viñedos europeos escaparon de una devastadora enfermedad… por ahora

Giménez-Romero, Àlex; Matías, Manuel A.
The Conversation, , (2024)

Spatial heterogeneity accelerates phase-to-trigger wave transitions in frog egg extracts

Puls, Owen; Ruiz-Reynés, Daniel; Tavella, Franco; Jin, Minjun; Kim, Yeonghoon; Gelens, Lendert; Yang, Qiong;
Nature Communications 15, 10455 (2024)

A cross-disciplinary research framework at institution level and beyond

Argyris, Apostolos; Hernández-García, Emilio; San Miguel, Maxi
Nature Communications 15, 10399 (1-3) (2024)

Theoretical and data-driven models in Ecology

Giménez-Romero, Àlex (Supervisor: Matias, Manuel A.)
PhD Thesis (2024)

La enfermedad de Pierce, una nueva amenaza para los viñedos del sur de Europa

Moralejo, Eduardo; Giménez-Romero, Àlex; Matías, Manuel A.
Phytoma España 363, 14-16 (2024)

On the structure of species-function participation in multilayer ecological networks

Hervías-Parejo, Sandra; Cuevas-Blanco, Mar; Lacasa, Lucas; Traveset, Anna; Donoso, Isabel; Heleno, Rubén; Nogales, Manuel; Rodríguez-Echeverría, Susana; Melián, Carlos; Eguíluz, Victor
Nature Communications 15, (2024)

Clonal Growth Patterns in Colonial Anthozoan Corals

Re, E; Schmidt-Roach, S; Llabres, E; Sintes, T; Duarte, CM
Oceanography and Marine Biology: An Annual Review, volume 62 (edited by P.A. Todd and B.D. Russell), CRC Press, 248-266 (2024)

Efficiency in the self assembly of viral capsids.

Aguilar Rosero, Daniel (Sintes, Tomas)
Master Thesis (2024)

Linking intercontinental biogeographic events to decipher how European vineyards escaped Pierce's disease

Moralejo, Eduardo; Giménez-Romero, Àlex; Matías, Manuel A.
Proceedings of the Royal Society B 291, 20241130 (1-12) (2024)

Delayed kernels for longitudinal survival analysis and dynamic prediction

Davies, Annabel L.; Coolen, Anthony C. C.; Galla, Tobias
Statistical Methods in Medical Research 33, 1836-1858 (2024)

Temporal Network Embedding Using Classical Multidimensional Scaling

Marín Rodríguez, Francisco Javier (Supervisors: Arola-Fernánez, Lluís; Lacasa, Lucas)
Master Thesis (2024)

Fluctuations in molecular motors: thermodynamics of F1-ATPase

Nadal Rosa; Adrian (Supervisor: Manzano, Gonzalo)
Master Thesis (2024)

Emergence of cooperation in the one-shot Prisoner’s dilemma through Discriminatory and Samaritan AIs

Zimmaro, Filippo; Miranda, Manuel; Ramos Fernández, José María; Moreno López, Jesús Arturo; Reddel, Max; Widler, Valeria; Antonioni, Alberto; Han, The Ahn
Journal of the Royal Society Interface , (2024)

Generating functional analysis of a thresholded random generalised Lotka-Volterra model

Roig Oliver, Adrian (supervisor: Galla, Tobias)
Master Thesis (2024)

A generalized numerical model for clonal growth in scleractinian coral colonies.

Llabrés, E.; Re, E; Pluma, N; Sintes, T; Duarte, CM
Proceedings of the Royal Society B 291, 20241327 (2024)

Shortest path or random walks? A framework for path weights in network meta‐analysis

Rücker, Gerta.; Papakonstantinou, Theodoros; Nikolakopoulou, Adriani; Schwarzer, Guido.; Galla, Tobias; Davies, Annabel L
Statistics in Medicine 43, 4287-4304 (2024)

Understanding the role of top-down input in visual information processing

Sofía Gil Rodrigo (Supervisors: Javier Galván and Claudio Mirasso)
Master Thesis (2024)

How Diet and Lifestyle Can Fine-Tune Gut Microbiomes for Healthy Aging

Tamayo, M.; M. Olivares, M.; Ruas-Madiedo, P.; Margolles, A.; Espín, J. C.; Medina, I.; Moreno-Arribas, M. V.; Canals, S.. ; Mirasso, C. R.; Ortín, S.; Beltrán-Sánchez, H.; Palloni, A.; Tomás-Barberán, F.; Sanz, Y.
Annual Review of Food Science and Technology 15, 283–305 (2024)

High-order correlations reveal complex memory in temporal hypergraphs

Gallo, Luca; Lacasa, Lucas; Latora, Vito; Battiston, Federico
Nature Communications 15, 4754 (2024)

‘Xylella fastidiosa’ y el cambio climático amenazan la viticultura europea: hemos calculado cuánto

Giménez-Romero, Àlex; Moralejo, Eduardo; Matías, Manuel A.
The Conversation, , (2024)

NEURAL DYNAMICS AND INFORMATION TRANSMISSION: from cortical circuits to the hippocampal modelling

Jaime Sánchez Claros (Supervisors Claudio Mirasso and Santiago Canals)
PhD Thesis (2024)

Eigenvalue spectra of finely structured random matrices

Poley, Lyle; Galla, Tobias; Baron, Joseph
Physical Review E 109, 064301 (2024)

Global warming significantly increases the risk of Pierce's disease epidemics in European vineyards

Giménez-Romero, Àlex; Iturbide, Maialen; Moralejo, Eduardo; Gutiérrez, José M.; Matías, Manuel A.
Scientific Reports 14, 9648 (1-12) (2024)

A Spatial Signal of Niche Differentiation in Tropical Forests

Umarani, Mihir; Wang Dianzhuo; O’Dwyer, James; D'Andrea, Rafael
The American Naturalist 203, 445-457 (2024)

Reconstructing brain functional networks through identifiability and deep learning

Zanin, Massimiliano; Aktürk, Tuba; Yıldırım, Ebru; Yerlikaya, Deniz; Yener, Görsev; Güntekin, Bahar
Network Neuroscience 8, 241–259 (2024)

Pulsed interactions unify reaction-diffusion and spatial nonlocal models for biological pattern formation

Eduardo H. Colombo, Ricardo Martinez-Garcia, Justin M. Calabrese, Cristobal Lopez, Emilio Hernandez-Garcia
Journal of Statistical Mechanics: Theory and Experiment 2024, 034001 (2024)

Deviation from neutral species abundance distributions unveils geographical differences in the structure of diatom communities

Pigani, E; Hay Mele, B; Campese, L; Ser-Giacomi, E; Ribera, M; Iudicone, D; Suweis,S
Science Advances 10, eadh0477 (2024)

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