2. Publicaciones

Publicaciones

Anomalies in the transcriptional regulatory network of the yeast Saccharomyces cerevisiae

Tugrul, Murat; Kabakcioglu, Alkan
Journal of Theoretical Biology 263, 328-336 (2010)

How Gaussian competition leads to lumpy or uniform species distributions

Pigolotti, Simone; López, Cristóbal; Hernández-García, Emilio; Andersen, Ken H.
Theoretical Ecology 3, 89-96 (2010)

Robustness of Transcriptional Regulation in Yeast-like Model Boolean Networks

Tugrul, Murat; Kabakcioglu, Alkan
International Journal of Bifurcation and Chaos 20, 929-935 (2010)

Simple models for scaling in phylogenetic trees

Hernandez-Garcia, Emilio; Tugrul, Murat; Herrada, E. Alejandro; Eguíluz, V.M.; Klemm, Konstantin
International Journal of Bifurcation and Chaos 20, 805-811 (2010)

Difusioonist jõuväljades

Heinsalu, Els
Eesti Füüsika Seltsi Aastaraamat 2009, Eesti Füüsika Selts, 62-92 (2010)

Dynamical phase coexistence: a simple solution to the savanna problem

Vazquez, Federico; López, Cristobal; Calabrese, Justin and Muñoz, Miguel Angel
Journal of Theoretical Biology 264, 360-366 (2010)

The independent and interactive effects of tree-tree establishment competition and fire on savanna structure and dynamics

Calabrese, Justin; Vazquez, Federico; López, Cristóbal; San Miguel, Maxi; Grimm, Volker
The American Naturalist 175, E44-E65 (2010)

Dynamic control for synchronization of separated cortical areas through thalamic relay

Gollo, L. L.; Mirasso, C. R.; Villa, A. E. P.
Neuroimage 52, 947-955 (2010)

Far in space and yet in synchrony: neuronal mechanisms for zero-lag long-range synchronization

Vicente, R.; Gollo L. L.; Mirasso, C. R.; Fischer, I; Pipa, G.
Coherent Behavior in Neuronal Networks, Springer, 143-168 (2009)

Spherical brushes within spherical cavities: A self- consistent field and Monte Carlo study.

Cerdà, J.J.; Sintes, T.; Toral, R.
Journal of Chemical Physics 131, 134901 (2009)

Modeling approach to regime shifts of primary production in shallow coastal ecosystems

Zaldívar, J.M.;Bacelar, F.S.; Dueri, S.; Marinov, D.; Viaroli, P.; Hernández-García, E.
Ecological Modelling 220, 3100-3110 (2009)

RED: A Set of Molecular Descriptors Based on Renyi Entropy

Delgado-Soler, Laura; Toral, Raul; Santos Tomás, M.; Rubio-Martinez, Jaime
Journal of Chemical Information and Modeling 49, 2457-2468 (2009)

Chemical and Biological Processes in Fluid Flows: A Dynamical Systems Approach

Neufeld, Zoltan; Hernandez-Garcia, Emilio
, Imperial College Press, London (2009)

Dynamics and Synchronization in Neuronal Models

Pérez, Toni (Director: Claudio Mirasso)
PhD Thesis (2009)

Simple Branching Models for Macroevolution

Tugrul, Murat (Directors: Emilio Hernandez-Garcia and Victor M. Eguiluz)
Master Thesis (2009)

Coherent Behavior in Neuronal Networks

Josic, Kresimir; Rubin, Jonathan; Matías, Manuel A.; Romo, Ranulfo (editors)
, Springer (2009)

Surface mixing and biological activity in the four Eastern Boundary Upwelling Systems

Rossi, Vincent; López, Cristóbal; Hernández-García, Emilio; Sudre, Joel; Garcon, Veronique; Morel, Yves
Nonlinear Processes in Geophysics 16, 557-568 (2009)

An Intersegmental Neuronal Architecture for Spinal Wave Propagation under Deletions

Perez, Toni; Tapia, Jesus; Mirasso, Claudio; Garcia-Ojalvo, Jordi; Quevedo, Jorge; Cuellar, Carlos; Manjarrez, Elias
Journal of Neuroscience 29, 10254-10263 (2009)

Active dendrites enhance neuronal dynamic range

Gollo, L. L.; Kinouchi, O.; Copelli, M.
PLoS Computational Biology 5, e1000402 (1-12) (2009)

Top marine predators track Lagrangian coherent structures

Tew Kai, E.; Rossi, V.; Sudre, J.; Weimerskirch, H.; Lopez, C.; Hernandez-Garcia, E.; Marsac, F.; Garçon, V.
Proceedings of the National Academy of Sciences of the USA (PNAS) 106, 8245-8250 (2009)

Fluid Dynamics in Developmental Biology: Moving Fluids that Shape Ontogeny

Cartwright, Julyan H. E.; Piro, Oreste; Tuval, Idan
HFSP Journal (Solicited Review) 3, 77-93 (2009)

Species competition: coexistence, exclusion and clustering

Hernández-García, Emilio; López, Cristóbal; Pigolotti, Simone; Andersen, Ken H.
Philosophical Transactions of the Royal Society A 367, 3183-3195 (2009)

Sex-related similarities and differences in the neural correlates of beauty

Cela-Conde, C. J.; Ayala, F. J.; Munar, E.; Maestú, F.; Nadal, M.; Capó, M. A.; del Río, D.; Juan J. López-Ibor J.; Ortiz, T.; Mirasso, C. R.; Marty, G.
Proceedings of the National Academy of Sciences of he USA (PNAS) 106, 3847-3852 (2009)

Beyond the nearest neighbor Zimm - Bragg model for helix - coil transition in peptides

Adrian Murza, Jan Kubelka
Biopolymers 91 (2), 120-131 (2009)

Drug absorption through a cell monolayer: A theoretical work on a non-linear three-compartment model

Komin, Niko; Toral, Raul
European Journal of Pharmaceutical Sciences 37, 106-114 (2009)

Ecological Thresholds and Regime Shifts: from theory to operation

Andersen, Tom; Carstensen, Jacob; Hernandez-Garcia, Emilio; Duarte, Carlos
Trends in Ecology and Evolution 24, 49-57 (2009)

Joint effects of nutrients and contaminants on the dynamics of a food chain in marine ecosystems

S. Bacelar, Flora; Dueri, Sibylle; Hernández-García, Emilio; Zaldívar, José Manuel
Mathematical Biosciences 218, 24-32 (2009)

Fluid dynamics of nodal flow and left-right patterning in development

Cartwright, J. H. E.; Piro, N.; Piro, O.; Tuval, I.
Developmental Dynamics 237, 3477-3490 (2008)

Network analysis identifies weak and strong links in a metapopulation system

Rozenfeld, A.F.; Arnaud-Haond, S.; Hernández-García, E.; Eguíluz, V.M; Serrão, E.A.; Duarte, C.M.
Proceedings of the National Academy of Sciences of the USA (PNAS) 105, 18824-18829 (2008)

Impact and Permanence of LASIK-induced Structural Changes in the Cornea on Pneumotonometric Measurements: Contributions of Flap Cutting and Stromal Ablation

Sánchez-Navés, Juan; Furfaro, Luca; Piro, Oreste; Balle, Salvador
Journal of Glaucoma 17, 611-618 (2008)

Nonlinear dynamics, the missing fundamental, and harmony

Cartwright, Julyan H. E.; González, Diego L.; Piro, Oreste
Mathematics and Computation in Music 2007 Proceedings, 2008 , (2008)

Dynamical relaying can yield zero time lag neuronal synchrony despite long conduction delays

Vicente, R.; Gollo, L.; Mirasso, C.; Fischer, I.; Pipa, G.
Proceedings of the National Academy of Sciences of the USA (PNAS) 105, 17157-17162 (2008)

Stochastic and Non-linear effects in Biological Systems

Komin, Niko; (director Toral, Raúl)
Memòria Investigació; UIB (2008)

Synchronization between populations of neurons

Lyra Gollo, Leonardo (Director: Claudio Mirasso)
Master Thesis (2008)

Systems with two symmetric absorbing states: relating the microscopic dynamics with the macroscopic behavior

Vazquez, Federico; López, Cristobal
Physical Review E 78, 061127 (1-5) (2008)

Bifurcation Analysis of a Marine Food Chain

Souza Bacelar, Flora (Director E. Hernandez-Garcia)
Master Thesis (2008)

Universal Scaling in the Branching of the Tree of Life

Herrada, E.A.; Tessone, C.J.; Klemm, K.; Eguíluz, V.M.; Hernández-García, E.; Duarte, C.M.
PLoS ONE 3, e2757 (1-6) (2008)

Biological activity in the wake of an island close to a coastal upwelling

Sandulescu, M.; López, C.; Hernández-García, E.; Feudel, U.
Ecological Complexity 5, 228-237 (2008)

Fluid Dynamics of Establishing Left-Right Patterning in Development

Cartwright, Julyan H. E.; Piro, Nicolas; Piro, Oreste; Tuval, Idan
Birth Defects Research (Part C: Embryo Today) 84, 95-101 (2008)

Comparative study of mixing and biological activity of the Benguela and Canary upwelling systems

Rossi, V.; López,C.; Sudre, J.; Hernández-García,E.; Garçon, V.
Geophysical Research Letters 35, L11602 (1-5) (2008)

Crystallization and melting of bacteria colonies and Brownian bugs

Ramos, F.; López, C.; Hernández-García, E.; Muñoz, M.A.
Physical Review E 77, 021102(1-12) (2008)

Experimental and modelling assessment of the effects of seagrass (P. oceanica) on flow and particle trapping

Hendriks, I.; Sintes, T.; Bouma, T.; Duarte, C.
Marine Ecology Progress Series 356, 163-173 (2008)

Ghost resonance in a pool of heterogeneous neurons

Balenzuela P.; Garcia-Ojalvo J.; Manjarrez E.; Martínez L.; Mirasso C.
Biosystems 89, 166-172 (2007)

Plankton blooms in vortices: The role of biological and hydrodynamic time scales

Sandulescu,M; López, C; Hernández-García, E; Feudel,U
Nonlinear Processes in Geophysics 14, 443-454 (2007)

Spatial patterns in non-locally interacting particle systems

Lopez, C.; Hernandez-Garcia, E.
European Physical Journal-Special Topics 146, 37-45 (2007)

Zero-lag Long Range Synchronization of Neurons Is Enhanced by Dynamical Relaying

Vicente, R.; Pipa, G.; Fischer, I.; Mirasso, C.R.
Lecture Notes in Computer Science 4688, 904-913 (2007)

Species clustering in competitive Lotka-Volterra models

Pigolotti, S.; López, C.; Hernández-García, E.
Physical Review Letters 98, 258101(1-4) (2007)

Effects of auditory noise on the psychophysical detection of visual signals: Cross-modal stochastic resonance

Manjarrez, E.; Mendez, I.; Martinez, L; Flores, A.; Mirasso, C. R.
Neuroscience Letters 415, 231-236 (2007)

Stochastic Resonance in the Motor System: Effects of Noise on the Monosynaptic Reflex Pathway of the Cat Spinal Cord

Martínez, L; Perez, T.; Mirasso, C; Manjarrez, E.
Journal of Neurophysiology 97, 4007-4016 (2007)

Oscillations and temporal signalling in cells

Tiana, G.; Krishna, S.; Pigolotti, S.; Jensen, M.H.; Sneppen, K.
Physical Biology 4, R1-R17 (2007)

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