2. Publications

Publications

Anomalies in the transcriptional regulatory network of the yeast Saccharomyces cerevisiae

Tugrul, Murat; Kabakcioglu, Alkan
Journal of Theoretical Biology 263, 328-336 (2010)

How Gaussian competition leads to lumpy or uniform species distributions

Pigolotti, Simone; López, Cristóbal; Hernández-García, Emilio; Andersen, Ken H.
Theoretical Ecology 3, 89-96 (2010)

Robustness of Transcriptional Regulation in Yeast-like Model Boolean Networks

Tugrul, Murat; Kabakcioglu, Alkan
International Journal of Bifurcation and Chaos 20, 929-935 (2010)

Simple models for scaling in phylogenetic trees

Hernandez-Garcia, Emilio; Tugrul, Murat; Herrada, E. Alejandro; Eguíluz, V.M.; Klemm, Konstantin
International Journal of Bifurcation and Chaos 20, 805-811 (2010)

Information flow during the quantum-classical transition

Kowalski, Andres M.; Martin, Maria T.; Plastino, Angelo; Zunino, Luciano
Physics Letters A 374, 1819-1826 (2010)

Difusioonist jõuväljades

Heinsalu, Els
Eesti Füüsika Seltsi Aastaraamat 2009, Eesti Füüsika Selts, 62-92 (2010)

Chaos-Based Optical Communications: Encryption Vs. Nonlinear Filtering

Jacobo, A.; C. Soriano, M.; Mirasso C. R.; Colet, P.
IEEE Journal of Quantum Electronics 46, 499-505 (2010)

Complexity-entropy causality plane: a useful approach to quantify the stock market inefficiency

Zunino, Luciano; Zanin, Massimiliano; Tabak, Benjamin M.; Pérez, Darío G.; Rosso, Osvaldo A.
Physica A 389, 1891-1901 (2010)

The Quantum-Classical Transition as an Information Flow

Kowalski, Andres M.; Martin, Maria T.; Zunino, Luciano; Plastino, Angelo; Casas, Montserrat
Entropy 12, 148-160 (2010)

Dynamical phase coexistence: a simple solution to the savanna problem

Vazquez, Federico; López, Cristobal; Calabrese, Justin and Muñoz, Miguel Angel
Journal of Theoretical Biology 264, 360-366 (2010)

Basic kinetic wealth-exchange models: common features and open problems

Patriarca, Marco; Heinsalu, Els; Chakraborti, Anirban
European Physical Journal B 73, 145-153 (2010)

Comment on `Equiprobability, Entropy, Gamma Distributions and Other Geometrical Questions in Multi-Agent Systems´

Toral, Raul
Entropy 11, 1121-1122 (2009)

Problems of Social Consensus: Voting , Language, Culture...

Maxi San Miguel
, Actar and Arts Santa Mònica (2009)

Effects of microstructures on mesoscopic morphological transitions in deposition growth models

Sánchez, P. A.; Sintes, T.; Piro, O.; Cartwright, J. H. E.
Proceedings of the Royal Society A: Mathematical, Physical and Engineering Science 465, 3875-3884 (2009)

Multifractal detrended cross-correlation analysis of temporal and spatial seismic data

Shadkhoo, S.; Jafari, G. R.
European Physical Journal B 72, 679-683 (2009)

A variational principle for the Pareto power law

Chakraborti, Anirban; Patriarca, Marco;
Physical Review Letters 103, 228701 (1-4) (2009)

Spherical brushes within spherical cavities: A self- consistent field and Monte Carlo study.

Cerdà, J.J.; Sintes, T.; Toral, R.
Journal of Chemical Physics 131, 134901 (2009)

Diversity-induced resonance in a model for opinion formation

Tessone, Claudio Juan; Toral, Raúl
European Physical Journal B 71, 549-555 (2009)

Diversity-induced resonance in a system of globally coupled linear oscillators

Toral, Raul; Hernandez-Garcia, Emilio;Gunton, James D.
International Journal of Bifurcation and Chaos 19, 3499-3508 (2009)

Residential segregation and cultural dissemination: An Axelrod-Schelling model

Gracia-Lázaro C.,Lafuerza L. F.,Floría L. M. and Moreno Y.
Physical Review E 80, 046123 (1-5) (2009)

RED: A Set of Molecular Descriptors Based on Renyi Entropy

Delgado-Soler, Laura; Toral, Raul; Santos Tomás, M.; Rubio-Martinez, Jaime
Journal of Chemical Information and Modeling 49, 2457-2468 (2009)

Chemical and Biological Processes in Fluid Flows: A Dynamical Systems Approach

Neufeld, Zoltan; Hernandez-Garcia, Emilio
, Imperial College Press, London (2009)

Gaussian approximation to the resolution of master equations

Fernández Lafuerza, Luis (Director Raúl Toral)
Master thesis (2009)

Resonance Induced by Repulsive Links

Vaz Martins, Teresa; Toral, Raúl
Applications of Nonlinear Dynamics - Model and Design of Complex Systems (In, Visarath; Longhini, Patrick; Palacios, Antonio, eds), XII, Springer Verlag, 439-444 (2009)

From quasiperiodicity to high-dimensional chaos without intermediate low-dimensional chaos

Pazó, Diego; Matías, Manuel A.
Submitted (2009)

Simple Branching Models for Macroevolution

Tugrul, Murat (Directors: Emilio Hernandez-Garcia and Victor M. Eguiluz)
Master Thesis (2009)

Reply to Slater: Extracting the backbone of multiscale networks

Serrano, M. Angeles; Boguña, Marian; Vespignaini, Alessandro
Proceedings of the National Academy Sciences of the USA (PNAS) 106, E67 (2009)

Gradual learning and the evolution of cooperation in the spatial continuous prisoner´s dilemma

Jimenez, Raul; Lugo, Hayde; San Miguel, Maxi
European Physical Journal B 71, 273-280 (2009)

Drifting instabilities of cavity solitons in vertical-cavity surface-emitting lasers with frequency-selective feedback

Paulau, P.V.; Gomila, D.; Colet, P.; Matías, M.A.; Loiko, N.A.; Firth, W.J.
Physical Review A 80, 023808 (1-8) (2009)

Mapping stochastic processes onto complex networks

Shirazi, A. H. ; Reza Jafari, G.; Davoudi, J; Peinke, J.;Reza Rahimi Tabar M.; Sahimi Muhammad
Journal of Statistical Mechanics-Theory and Experiment , P07046 (2009)

Vortex Nucleation in Bose-Einstein Condensates due to Effective Magnetic Fields

Murray, D.R.; Ohberg, P.; Gomila, D.; Barnett, S.M.
Physical Review A 79, 063618 (1-5) (2009)

Noisy continuous-opinion dynamics

M. Pineda, R. Toral and E. Hernandez-Garcia
Journal of Statistical Mechanics: Theory and Experiment P08001, (1-18) (2009)

Top marine predators track Lagrangian coherent structures

Tew Kai, E.; Rossi, V.; Sudre, J.; Weimerskirch, H.; Lopez, C.; Hernandez-Garcia, E.; Marsac, F.; Garçon, V.
Proceedings of the National Academy of Sciences of the USA (PNAS) 106, 8245-8250 (2009)

Stochastic resonance in bistable confining potentials

Heinsalu, Els; Patriarca, Marco; Marchesoni, Fabio
European Physical Journal B 69, 19-22 (2009)

Fractional Fokker-Planck subdiffusion in alternating force fields

Heinsalu, Els; Patriarca, Marco; Goychuk, Igor; Hänggi, Peter
Physical Review E 79, 041137 (2009)

Predict-prevent control method for perturbed excitable systems

Ciszak,Marzena; Mirasso,Claudio; Toral,Raúl; Calvo,Oscar
Physical Review E 79, 046203 (1-5) (2009)

Spatial Structures And Information Processing in Nonlinear Optical Cavities

Jacobo, Adrian (Directors P.Colet and D. Gomila)
PhD Thesis (2009)

External noise-induced phenomena in CO oxidation on single crystal surfaces

M. Pineda and R. Toral
Journal of Chemical Physics 130, 124704 (1-7) (2009)

Species competition: coexistence, exclusion and clustering

Hernández-García, Emilio; López, Cristóbal; Pigolotti, Simone; Andersen, Ken H.
Philosophical Transactions of the Royal Society A 367, 3183-3195 (2009)

Determination of Phase Noise Spectra in Optoelectronic Microwave Oscillators: a Langevin Approach

Chembo Kouomou, Yanne; Volyanskiy, Kirill; Larger, Laurent; Rubiola, Enrico; Colet, Pere
IEEE Journal of Quantum Electronics 45, 178-186 (2009)

Self-Tuned Critical Anti-Hebbian Networks

Magnasco, Marcelo O.;Piro, Oreste; Cecchi. GA
Physical Review Letters 102, 258102 (2009)

Broad lifetime distributions for ordering dynamics in complex networks

Toivonen, R.; Castelló, X.; Eguíluz, V.; Saramäki, J.; Kaski, K; San Miguel,M.
Physical Review E 79, 016109 (1-8) (2009)

Controlling the emission properties of multimode vertical-cavity surface-emitting lasers via polarization- and frequency-selective feedback

Kouomou Chembo, Y.; Mandre, Shyram K; Fischer, Ingo; Elsässer, Wolfgang and Colet, P.
Physical Review A 79, 013817 (1-10) (2009)

Extracting the multiscale backbone of complex weighted networks

Serrano, M. Ángeles; Boguñá, Marián; Vespignani, Alessandro
Proceedings of the National Academy of Sciences of the USA (PNAS) 106, 6483-6488 (2009)

Collective Phenomena in Complex Social Networks

Vazquez, Federico; Gonzalez-Avella, Juan Carlos; Eguiluz, Victor M.; San Miguel, Maxi.
Applications of Nonlinear Dynamics Model and Design of Complex Systems (In, Visarath; Longhini, Patrick; Palacios, Antonio, eds), Springer Verlag, XII, 189-200 (2009)

Comparison between Eulerian diagnostics and Finite-Size Lyapunov Exponents computed from Altimetry in the Algerian basin

d'Ovidio, F; Isern-Fontanet, J;López, C; Hernández-García, E; García-Ladona, E
Deep-Sea Research I 56, 15-31 (2009)

Divide and conquer: resonance induced by competitive interactions

Vaz Martins,Teresa;Toral,Raul;Santos,M.A.
European Physical Journal B 67, 329-336 (2009)

Joint effects of nutrients and contaminants on the dynamics of a food chain in marine ecosystems

S. Bacelar, Flora; Dueri, Sibylle; Hernández-García, Emilio; Zaldívar, José Manuel
Mathematical Biosciences 218, 24-32 (2009)

Network analysis identifies weak and strong links in a metapopulation system

Rozenfeld, A.F.; Arnaud-Haond, S.; Hernández-García, E.; Eguíluz, V.M; Serrão, E.A.; Duarte, C.M.
Proceedings of the National Academy of Sciences of the USA (PNAS) 105, 18824-18829 (2008)

Impact and Permanence of LASIK-induced Structural Changes in the Cornea on Pneumotonometric Measurements: Contributions of Flap Cutting and Stromal Ablation

Sánchez-Navés, Juan; Furfaro, Luca; Piro, Oreste; Balle, Salvador
Journal of Glaucoma 17, 611-618 (2008)

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