Fucus vesiculosus SNP genotyping.
| by Canovas F, Mota C, Pearson G |
| manuscript in preparation |
| Output type: data |
Expressed Sequence Tags (EST) were developed (Pearson et al. 2009) and these EST were used to define SNP, Single Nucleotide Polymorphisms, in populations of the algae Fucus spp.
The first two data files correspond to the allelic frequencies and the following two data files to genotype frequencies per population of the macroalga Fucus vesiculosus in different habitats (high and low shore). The first column lists the SNP loci developed in this project and the following columns list the allele frequencies of the various possible nucleotide states at each locus or the genotypes. The 5th file contains the metadata describing the sampling locations. In summary, the 5 files contain:
- F vesiculosus SNP alleles high shore from
Widemouth Bay, UK
- F vesiculosus SNP alleles low shore from
Widemouth Bay, UK
- F vesiculosus SNP Genotyping high shore
from Widemouth Bay, UK
- F vesiculosus SNP Genotyping low shore from
Widemouth Bay, UK
- Metadata SW UK
Fucus sampling locations.pdf
Pearson GA, Hoarau G, Lago-Leston A, Coyer JA, Kube
M, Henckel K, Serrăo EA, Corre E, Stam WT, Olsen JL (2009). An Expressed
Sequence Tag (EST) Analysis of the Intertidal Brown Seaweeds Fucus serratus (L.) and F. vesiculosus (L.) (Heterokontophyta, Phaeophyceae)
in Response to Abiotic Stressors. Marine Biotechnology DOI
10.1007/s10126-009-9208-z
